biobb_amber

• ambpdb package
  • Submodules
  • ambpdb.amber_to_pdb module
    • AmberToPDB
      • AmberToPDB.check_data_params()
      • AmberToPDB.launch()
    • amber_to_pdb()
    • main()
• cpptraj package
  • Submodules
  • cpptraj.cpptraj_randomize_ions module
    • CpptrajRandomizeIons
      • CpptrajRandomizeIons.check_data_params()
      • CpptrajRandomizeIons.launch()
    • cpptraj_randomize_ions()
    • main()
• leap package
  • Submodules
  • leap.leap_add_ions module
    • LeapAddIons
      • LeapAddIons.check_data_params()
      • LeapAddIons.find_out_number_of_ions()
      • LeapAddIons.launch()
    • leap_add_ions()
    • main()
  • leap.leap_build_linear_structure module
    • LeapBuildLinearStructure
      • LeapBuildLinearStructure.check_data_params()
      • LeapBuildLinearStructure.launch()
    • leap_build_linear_structure()
    • main()
  • leap.leap_gen_top module
    • LeapGenTop
      • LeapGenTop.check_data_params()
      • LeapGenTop.launch()
    • leap_gen_top()
    • main()
  • leap.leap_solvate module
    • LeapSolvate
      • LeapSolvate.check_data_params()
      • LeapSolvate.launch()
    • leap_solvate()
    • main()
• nab package
  • Submodules
  • nab.nab_build_dna_structure module
    • NabBuildDNAStructure
      • NabBuildDNAStructure.check_data_params()
      • NabBuildDNAStructure.launch()
    • main()
    • nab_build_dna_structure()
• parmed package
  • Submodules
  • parmed.parmed_cpinutil module
    • ParmedCpinUtil
      • ParmedCpinUtil.check_data_params()
      • ParmedCpinUtil.launch()
    • main()
    • parmed_cpinutil()
  • parmed.parmed_hmassrepartition module
    • ParmedHMassRepartition
      • ParmedHMassRepartition.check_data_params()
      • ParmedHMassRepartition.launch()
    • main()
    • parmed_hmassrepartition()
• pdb4amber package
  • Submodules
  • pdb4amber.pdb4amber_run module
    • Pdb4amberRun
      • Pdb4amberRun.check_data_params()
      • Pdb4amberRun.launch()
    • main()
    • pdb4amber_run()
• process package
  • Submodules
  • process.process_minout module
    • ProcessMinOut
      • ProcessMinOut.check_data_params()
      • ProcessMinOut.launch()
    • main()
    • process_minout()
  • process.process_mdout module
    • ProcessMDOut
      • ProcessMDOut.check_data_params()
      • ProcessMDOut.launch()
    • main()
    • process_mdout()
• sander package
  • Submodules
  • sander.sander_mdrun module
    • SanderMDRun
      • SanderMDRun.check_data_params()
      • SanderMDRun.create_mdin()
      • SanderMDRun.launch()
    • main()
    • sander_mdrun()
• pmemd package
  • Submodules
  • pmemd.pmemd_mdrun module
    • PmemdMDRun
      • PmemdMDRun.check_data_params()
      • PmemdMDRun.create_mdin()
      • PmemdMDRun.launch()
    • main()
    • pmemd_mdrun()
• cphstats package
  • Submodules
  • cphstats.cphstats_run module
    • CphstatsRun
      • CphstatsRun.check_data_params()
      • CphstatsRun.launch()
    • cphstats_run()
    • main()
  • cphstats.cestats_run module
    • CestatsRun
      • CestatsRun.check_data_params()
      • CestatsRun.launch()
    • cestats_run()
    • main()